Publications

J Barido-Sottani, JA Justison, R Borges, JM Brown, W Dismukes, B do Rosario Petrucci, L Guimarães, Fabreti, S Höhna, MJ Landis, PO Lewis, MR May, FK Mendes, W Pett, BD Redelings, CM Tribble, AM Wright, R Zenil-Ferguson, TA Heath. Lessons learned from organizing and teaching virtual phylogenetics workshops. Accepted. Bulletin of the Society of Systematic Biologists.

EW Wendt, LR Malabarba, MP Braga, WA Boeger, MJ Landis, TP Carvalho. 2022. Phylogeny, species delimitation, and ecological and morphological diversity of Characithecium (Monogenoidea: Dactylogyridae). In press. Parasitology.
[paper]

MJ Landis, I Quintero, MM Muñoz, F Zapata, MJ Donoghue. 2022. Phylogenetic inference of where species spread or split across barriers. Proceedings of the National Academy of Sciences 119: e2116948119.
[paper] [code]

CM Tribble, WA Freyman, JY Lim, MJ Landis, J Barido-Sottani, BJ Kopperud, S Höhna, MR May. 2021. RevGadgets: an R Package for visualizing Bayesian phylogenetic analyses from RevBayes. 2022. Methods in Ecology and Evolution 13:314-323.
[paper] [code]

MP Braga, N Janz, S Nylin, F Ronquist, MJ Landis. 2021. Phylogenetic reconstruction of ancestral ecological networks through time for pierid butterflies and their host plants. Ecology Letters 24: 2134-2145.
[paper] [code]

MJ Landis, EJ Edwards, MJ Donoghue. 2021. Modeling phylogenetic biome shifts on a planet with a past. Systematic Biology 70: 86-107.
[paper] [code]

MJ Landis, DAR Eaton, WL Clement, B Park, EL Spriggs, PW Sweeney, EJ Edwards, MJ Donoghue. 2020. Joint phylogenetic estimation of geographic movements and biome shifts during the global diversification of Viburnum. Systematic Biology 70: 86-107.
[paper] [code]

MJ Landis. 2020. “Biogeographic dating of phylogenetic divergence times using priors and processes” (pp 135-155) in The Molecular Evolutionary Clock: Theory and Practice (SYW Ho, ed.). Springer.
[paper]

AS Kim, O Zimmerman, JM Fox, CA Nelson, K Basore, R Zhang, L Durnell, C Desai, C Bullock, SL Deem, J Oppenheimer, B Shapiro, T Wang, S Cherry, CB Coyne, SA Handley, MJ Landis (+), DH Fremont (+), MS Diamond (+). 2020. An evolutionary insertion in the Mxra8 receptor binding site confers resistance to alphavirus infection and pathogenesis. Cell Host & Microbe 27:428-440.
[paper]

MP Braga, MJ Landis, S Nylin, N Janz, F Ronquist. 2020. Bayesian inference of ancestral host-parasite interactions under a phylogenetic model of host repertoire evolution. Systematic Biology 69: 1149-1162.
[paper] [tutorial]

I Quintero, MJ Landis 2020. Interdependent phenotypic and biogeographic evolution driven by biotic interactions. Systematic Biology 69: 739-755.
[paper] [code]

DJ Field, JS Berv, AY Hsiang, R Lanfear, MJ Landis, A Dornburg. 2019. Timing the extant avian radiation: The rise of modern birds, and the importance of modeling molecular rate variation. Bulletin of the American Natural History Museum 440: 159-181
[paper]

MJ Landis, WA Freyman, BG Baldwin. 2018. Retracing the silversword radiation despite phylogenetic, biogeographic, and paleogeographic uncertainty. Evolution, 72: 2343-2359.
[paper] [code] [tutorial]

B Park, M Sinnott-Armstrong, C Schlutius, JC Zuluaga, EL Spriggs, RG Simpson, E Benavides, MJ Landis, PW Sweeney, DAR Eaton, MJ Donoghue. 2018. Sterile marginal flowers increase visitation and fruit set in the hobblebush (Viburnum lantanoides, Adoxaceae) at multiple spatial scales. Annals of Botany, 123: 381-390.

MJ Landis, JG Schraiber. 2017. Pulsed evolution shaped modern vertebrate body sizes. Proceedings of the National Academy of Sciences, 114: 13224-13229.
[paper] [code]

S Höhna, MJ Landis, JP Huelsenbeck. 2017. Parallel power posterior analyses for fast computation of marginal likelihoods in phylogenetics. Bioinformatics, Accepted.
[paper (pre-print)]

MJ Landis. 2017. Biogeographic dating of speciation times using paleogeographically informed processes. Systematic Biology, 66: 128-144.
[paper] [code]

S Höhna, MJ Landis, TA Heath. 2017. Phylogenetic Inference Using RevBayes. Current Protocols in Bioinformatics, 57: 6.16-6.16.34.
[paper]

S Höhna, MJ Landis, TA Heath, B Boussau, N Lartillot, BR Moore, JP Huelsenbeck, F Ronquist. 2016. RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language. Systematic Biology, 65: 726-736.
[paper] [code]

JG Schraiber, MJ Landis. 2015. Sensitivity of quantitative traits to mutational effects and number of loci. Theoretical Population Biology, 102:85-93.
[paper] [code]

S Höhna, TA Heath, B Boussau, MJ Landis, F Ronquist, JP Huelsenbeck. 2014. Probabilistic graphical model representation in phylogenetics. Systematic Biology, 63: 753-771.
[paper]

MJ Landis, T Bedford. 2014. Phylowood: interactive web-based animations of biogeographic and phylogeographic histories. Bioinformatics, 30: 123-124.
[paper] [code]

MJ Landis, NJ Matzke, BR Moore, JP Huelsenbeck. 2013. Bayesian Analysis of Biogeography when the Number of Areas is Large. Systematic Biology, 62: 789-804.
[paper] [code]

MJ Landis(*), JG Schraiber (*), M Liang. 2013. Phylogenetic Analysis Using Lévy Processes: Finding Jumps in the Evolution of Continuous Traits. Systematic Biology, 62: 193-204.
[paper] [code]


work from lab in bold; (*) shared first authorship; (+) shared corresponding authorship