The Landis Lab studies the evolution of biodiversity: how has life radiated throughout and adapted to an ever-changing world? We study evolution by developing probabilistic models, writing open source and community-minded software, and analysing simulated and empirical data.
Biological research interests for the Landis Lab include phylogenetic inference, divergence time estimation, historical biogeography, the evolution of ecological interactions, phenotypic evolution, and pathogen and parasite spread.
Our methodological interests include phylogenetic model design, stochastic processes, Bayesian inference, deep learning, and probabilistic programming.
Interested in joining? We’re always looking for creative thinkers who study evolution! We have funded positions available for postdocs and PhD students. Visit the People page for more information.
- New work led by Ammon Thompson now accepted and online in Systematic Biology. The work shows that convolutional neural networks trained for viral phylogeography perform similarly to gold-standard Bayesian methods under a range of realistic model misspecification scenarios. Some ideas captured in the Phyloseminar recording, here.
- We are recruiting graduate students to study phylogenetic approaches, particularly for epidemiology using deep learning inference methods. Opportunities to join the lab through the Division of Biological & Biomedical Sciences or Computer Science & Engineering PhD programs. Email Michael with a brief description research interests and/or a recent CV to express your intent to apply.
- Some good news for the lab: NIH/NSF-EEID awarded us funding to develop new Bayesian and deep learning methods to reconstruct phylogeographic spread of viruses among multiple populations and species. Collaborators are Krista Milich (Anthro), Dave Wang (Pathology & Immunology), and Innocent Rwego (Makerere University). We’ll be hiring for computational epidemiologists soon. 🦠
- Our lab is hiring a postdoc to research statistical phylogenetic models and methods. We’ll design the project together, based on shared interests and types of expertise. Position is for 2+ years with $60k salary. Visit our ad on evoldir for more details.
- Also, be sure to check out our new YouTube channel with collected video recordings of research talks from our lab members. Videos are also cross-linked through papers.
- Thrilled to share that Fàbio Mendes (postdoc) will be joining LSU as an assistant professor in Fall 2024! Contact him to learn about joining his new lab as grad student or postdoc. 🎉🎉
- After a year of planning, Michael has helped launch a new Mentoring Program with the Society of Systematic Biologists as a team effort with Ixchel González-Ramírez, Alonso Delgado, and Laura Kubatko. Our pilot program formed 22 mentoring pairs to help mentor young systematists, worldwide.
- New perspective piece with Nate Upham in Science on how diverse genomic sequencing among mammal species teaches us new lessons about the evolutionary history of our clade (link).
- Sean McHugh just passed his qualifying exam on ecological niche evolution. Congrats, Sean!! 🥳
- Albert Soewongsono has just joined our lab as a postdoctoral researcher to study statistical models of lineage diversification. Welcome, Albert!
- We just refreshed the lab website’s Research page to now feature recent projects and papers, and the People page to now feature a new Expectations & Values document, written collaboratively by our group.
- Added new websites dedicated to our NSF-funded Hawaiian plant radiation project (link) and our ITF-funded Ugandan viral phylogeography project (link).
- Thanks to the WUSTL Incubator for Transdisciplinary Futures for funding our new project on viral phylogeography. In collaboration with Krista Milich (Anthropology) and Dave Wang (Pathology & Immunology).
- New paper in Annual Reviews on modeling the evolution of intimate ecological interactions among species using cophylogenetic methods. Paper available here.
- Sean McHugh has officially joined our group as a new PhD student. Sean is interested in how ecological traits evolve among phylogenetic lineages. Welcome, Sean!
- We’re hiring a 3yr postdoc to collaborate on phylogenetic models! Details for applying are here. Feel free to email me with any questions.
- I wrote a short article on inferring where anole ranges tend to split for Anole Annals, based on our recent paper on modeling historical bigoeography.
- Two cheers for Sarah Swiston for passing her qualifying exam and for being awarded the NSF Graduate Research Fellowship! 🎉🎉
- New study now published in PNAS, modeling how regional features of geography (e.g. oceans, distances) influence speciation, extinction, and dispersal rates. Read more here and here.
- With the re-opening of the lab this Fall, our group welcomes three new members – Dr. Fábio Mendes (postdoc), Sarah Swiston (PhD student), and Mihir Shah (undergrad) – and bids farewell to two others – Dr. Mariana Braga (postdoc) and Ernie Ramos (undergrad).
- We have a new paper out in Ecology Letters, introducing a new phylogenetic method to reconstruct how ecological networks (e.g. between plant and butterfly species) evolved over deep time scales. Read more here!
- Our very own Dr. Mariana Braga won the Publisher’s Award from Systematic Biology for her paper entitled “Bayesian inference of ancestral host–parasite interactions under a phylogenetic model of host repertoire evolution”. Nicely done, Mariana!
- We’re excited to welcome several new people who recently joined the lab. Dr. Ammon Thompson is a visiting scholar from the National Geospatial Intelligence Agency who is working with us to develop phylogenetic methods to predict epidemiological outcomes.
- We’re also fortunate to have two new undergraduate researchers: Ernie Ramos is a math major interested in the relationship between ecology, habitat, and evolution; and Walker Sexton is a biology major interested in evolution, systematics, and paleogenomics.
- We’re hiring for a postdoc to study computational phylogenetics and biogeography. Application reviews begin 01 Feb 2021. Apply here!
- Our Viburnum work featured on the cover of this year’s first issue of Systematic Biology!
- The NSF funded our grant to model how plant lineages radiated throughout the Hawaiian archipelago! Work is in collaboration with Felipe Zapata (UCLA), Nina Ronsted (NTBG Hawaii), Warren Wagner (Smithsonian), Bruce Baldwin (UC Berkeley), and Will Freyman (23andMe).
- A second new paper in Systematic Biology by Michael and Yale colleagues was accepted, which introduces an inference framework to model how lineages shift among paleobiomes, also investigating the evolution of Viburnum.
- Our group was highlighted by the Society for the Study of Evolution in their monthly New Faculty Profiles. Read the interview here.
- Michael and collaborators from Yale have a new paper in Systematic Biology that introduces a phylogenetic method to jointly infer species relationships, divergence times, and ancestral ranges and biomes from extant and fossil taxa, applied to the plant clade, Viburnum.
- Mariana, Michael, and collaborators from Stockholm University and the Swedish Natural History Museum have published a new paper in Systematic Biology that introduces a phylogenetic model to estimate how the intimate species interactions co-evolved, with an application to host plant-butterfly co-evolution.
- With collaborators in Wash U School of Medicine, Michael has a new paper published in Cell Host & Microbe, investigating the evolutionary origin of an insertion sequence that confers resistances to alphavirus infections, such as Chikungunya, found only cows & their close relatives.
- Michael and collaborator Ignacio Quintero (ENS Paris) have a new paper that introduces a new framework for modeling the interdependent evolution of phenotypes and biogeography among co-evolving (e.g. competing) phylogenetic lineages, with an application in Darwin’s finches from the Galapagos.
- Dr. Mariana Braga has joined the lab as a postdoctoral researcher. Dr. Braga recently earned her PhD from Stockholm University, where she studied the co-evolution of plant-insect interactions. Welcome!
- We are actively recruiting PhD students to join us for Fall 2020! Interested applicants, please contact firstname.lastname@example.org so we can learn more about you and your research interests, and so we can answer any questions you have about applying. Learn more about applications here.
- Just returned from the Workshop on Molecular Evolution for 2019 at MBL in beautiful ctenophorous Woods Hole, MA. Our lecture and lab materials for teaching Bayesian phylogenetics using RevBayes are hosted here – resources compiled by Dr. Tracy Heath!
- We are seeking researchers interested in studying evolutionary biology from a quantitative perspective.
New lab members will design statistical models, develop scientific software methods, lead projects, and publish first-author papers.
Postdoctoral and PhD student positions are to start in Summer/Fall 2019 (some flexibility).
If interested, please email a brief statement of your research interests and a copy of your CV to email@example.com.
A broader invitation to apply will be published by December 1, 2018.